So I played Yoshi's Woolly World today and went to the amiibo hut. I tried using some of the Super Smash Bros DLC characters to see if there would be Yoshi versions of them. You just get "amiibo Yoshi" if you use them. I tried Mewtwo, Lucas, and Ryu. (I don't own Roy) Mewtwo and the other Pokemon don't give you Yoshis based on the Pokemon anyway so Mewtwo's result was obvious. Shovel Knight and Waddle Dee also give you "amiibo Yoshi."
So while Daisy, Waluigi, and Boo do work with Yoshi's Woolly World, I wouldn't expect Yoshi versions of them. Don't know if this was obvious to anyone but I actually didn't know until I tested some of the newer amiibo today.
Maybe we'll get Daisy Yoshi on the 3DS port coming next year? Assuming the amiibo hut is still a thing in there.